{"id":286,"date":"2024-08-11T07:15:38","date_gmt":"2024-08-11T07:15:38","guid":{"rendered":"https:\/\/fohs.bgu.ac.il\/ocohenlab\/?page_id=286"},"modified":"2026-02-22T12:25:25","modified_gmt":"2026-02-22T12:25:25","slug":"research-news","status":"publish","type":"page","link":"https:\/\/fohs.bgu.ac.il\/ocohenlab\/research-news\/","title":{"rendered":"Research"},"content":{"rendered":"\n<div class=\"wp-block-group has-global-padding is-layout-constrained wp-block-group-is-layout-constrained\">\n<div class=\"wp-block-group is-content-justification-center is-nowrap is-layout-flex wp-container-core-group-is-layout-23441af8 wp-block-group-is-layout-flex\">\n<figure class=\"wp-block-image size-large is-resized\"><a href=\"https:\/\/scholar.google.com\/citations?user=i_TK9j8AAAAJ&amp;hl=en\"><img decoding=\"async\" src=\"https:\/\/upload.wikimedia.org\/wikipedia\/commons\/thumb\/c\/c7\/Google_Scholar_logo.svg\/2048px-Google_Scholar_logo.svg.png\" alt=\"\" style=\"width:64px;height:auto\"\/><\/a><\/figure>\n\n\n\n<figure class=\"wp-block-image size-large is-resized\"><a href=\"https:\/\/scholar.google.com\/citations?user=i_TK9j8AAAAJ&amp;hl=en\"><img decoding=\"async\" src=\"https:\/\/scholar.google.com\/intl\/en\/scholar\/images\/2x\/scholar_logo_64dp.png\" alt=\"\" style=\"width:367px;height:auto\"\/><\/a><\/figure>\n<\/div>\n<\/div>\n\n\n\n<div id=\"ez-toc-container\" class=\"ez-toc-v2_0_81 counter-hierarchy ez-toc-counter ez-toc-grey ez-toc-container-direction\">\r\n<div class=\"ez-toc-title-container\">\r\n<span class=\"ez-toc-title-toggle\"><\/span><\/div>\r\n<nav><ul class='ez-toc-list ez-toc-list-level-1 ' ><li class='ez-toc-page-1 ez-toc-heading-level-2'><a class=\"ez-toc-link ez-toc-heading-1\" href=\"https:\/\/fohs.bgu.ac.il\/ocohenlab\/research-news\/#Selected_Publications\" >Selected Publications<\/a><\/li><li class='ez-toc-page-1 ez-toc-heading-level-2'><a class=\"ez-toc-link ez-toc-heading-2\" href=\"https:\/\/fohs.bgu.ac.il\/ocohenlab\/research-news\/#Latest_publications\" >Latest publications<\/a><\/li><\/ul><\/nav><\/div>\r\n<h2 class=\"wp-block-heading\"><span class=\"ez-toc-section\" id=\"Selected_Publications\"><\/span>Selected Publications<span class=\"ez-toc-section-end\"><\/span><\/h2>\n\n\n\n<p>Wander, S.A., Cohen, O., Gong, X., Johnson, G.N., Buendia-Buendia, J.E., Lloyd, M.R., Kim, D., Luo, F., Mao, P., Helvie, K. and Kowalski, K.J., 2020. <strong>The genomic landscape of intrinsic and acquired resistance to cyclin-dependent kinase 4\/6 inhibitors in patients with hormone receptor\u2013positive metastatic breast cancer.<\/strong> Cancer discovery, 10(8), pp.1174-1193.<\/p>\n\n\n\n<p>Nayar, U., Cohen, O., Kapstad, C., Cuoco, M.S., Waks, A.G., Wander, S.A., Painter, C., Freeman, S., Persky, N.S., Marini, L. and Helvie, K., 2019.<strong> Acquired HER2 mutations in ER+ metastatic breast cancer confer resistance to estrogen receptor\u2013directed therapies. <\/strong>Nature genetics, 51(2), pp.207-216.<\/p>\n\n\n\n<p>Mao, P., Cohen, O., Kowalski, K.J., Kusiel, J.G., Buendia-Buendia, J.E., Cuoco, M.S., Exman, P., Wander, S.A., Waks, A.G., Nayar, U. and Chung, J., 2020. <strong>Acquired FGFR and FGF alterations confer resistance to estrogen receptor (ER) targeted therapy in ER+ metastatic breast cancer<\/strong>. Clinical Cancer Research, 26(22), pp.5974-5989.<\/p>\n\n\n\n<p>Waks, A.G., Cohen, O., Kochupurakkal, B., Kim, D., Dunn, C.E., Buendia, J.B., Wander, S., Helvie, K., Lloyd, M.R., Marini, L. and Hughes, M.E., 2020. <strong>Reversion and non-reversion mechanisms of resistance to PARP inhibitor or platinum chemotherapy in BRCA1\/2-mutant metastatic breast cancer<\/strong>. Annals of Oncology, 31(5), pp.590-598.<\/p>\n\n\n\n<p>Sklarz, M., Levin, L., Gordon, M. and Chalifa-Caspi, V., 2017. <strong>NeatSeq-Flow: a lightweight high throughput sequencing workflow platform for non-programmers and programmers alike<\/strong>. BioRxiv, p.173005.<\/p>\n\n\n\n<p>Cohen, O., Doron, S., Wurtzel, O., Dar, D., Edelheit, S., Karunker, I., Mick, E. and Sorek, R., 2016. <strong>Comparative transcriptomics across the prokaryotic tree of life<\/strong>. Nucleic Acids Research, 44(W1), pp.W46-W53.<\/p>\n\n\n\n<p>Cohen, O., Gophna, U. and Pupko, T., 2011. <strong>The complexity hypothesis revisited: connectivity rather than function constitutes a barrier to horizontal gene transfer.<\/strong> Molecular biology and evolution, 28(4), pp.1481-1489.<\/p>\n\n\n\n<h2 class=\"wp-block-heading\"><span class=\"ez-toc-section\" id=\"Latest_publications\"><\/span>Latest publications<span class=\"ez-toc-section-end\"><\/span><\/h2>\n\n\n\n<p>Yan, P., Bui, T., Jimenez, E. R., Kuang, Y., Xu, S., Paweletz, C., <span style=\"text-decoration: underline;\">Haimov, H.<\/span>, <span style=\"text-decoration: underline;\">Sklarz, M.<\/span>, <span style=\"text-decoration: underline;\">Cohen, O.<\/span>, McAllister, S. S. and Polyak, K., 2025. <strong>Aging-associated differences in mammary tumor-initiating populations and immune evasion pathways in breast cancer<\/strong>, PNAS. (Accepted).<\/p>\n\n\n\n<p>Livneh, E., Liju, V. B., Waidha, K., Muraleedharan, A., Jayaram, D. R., <span style=\"text-decoration: underline;\">Haimov, H.<\/span>, Jagadeeshan, S., Manikandan, D., Abu Shareb, R., Nurukurti, L., <span style=\"text-decoration: underline;\">Sklarz, M.<\/span>, Gutkind, J. S., Allon, I., <span style=\"text-decoration: underline;\">Cohen, O.<\/span>, and Elkabets, M., 2025. <strong>PKC-eta promotes breast cancer metastasis by regulating the Hippo\u2013YAP signaling pathway<\/strong>. Signal Transduction and Targeted Therapy, (accepted)<\/p>\n\n\n\n<p>Ben Lulu, T., Manikandan, D. B., <span style=\"text-decoration: underline;\">Pevzner, Y.<\/span>, <span style=\"text-decoration: underline;\">Sklarz, M.<\/span>, Eisdorfer, S. A., Awad, S., Mathukkada, S., Marripati, D., Wainer, M., Shimshilashvili-Kleiner, L., Ohana, E., Cohen, I., Zhang, J., Alassam, S. S., Rotblat, B., Wang, H., Kong, D., <span style=\"text-decoration: underline;\">Cohen, O.<\/span>, Toiber, D. and Elkabets, M., 2025. <strong>Pharmacological activation of SIRT6 suppresses progression of head and neck and esophageal squamous cell carcinoma by modulation of cellular metabolism and protein translation<\/strong>. Cell Death &amp; Disease, 16(1), p.727.<\/p>\n\n\n\n<p>Yassin, A.A.K., Ure\u00f1a Martin, C., Le Saux, G., Pandey, A., Tzadka, S., Toledo, E., Pandit, J.J., Sherf, T., Nusbaum, I., Bhattachrya, B., Banerji, R., Greenshpan, Y., Abu Abu Ahmad, M., Radinsky, O., Sklarz, M., Gazit, R., Elkabets, M., Ghassemi, S., Cohen, O., Schvartzman, M., Porgador, A, 2025. <strong>Mechanostimulatory Platform for Improved CAR T Cell Immunotherapy<\/strong>. Advanced Materials, p.2412482.<\/p>\n\n\n\n<p>Zhang, D., Segerstolpe, \u00c5., Slyper, M., Waldman, J., Murray, E., Strasser, R., Watter, J., Cohen, O., Ashenberg, O., Abravanel, D. and Jan\u00e9-Valbuena, J., 2025. <strong>SlideCNA: spatial copy number alteration detection from Slide-seq-like spatial transcriptomics data<\/strong>. Genome Biology, 26(1), p.112.<\/p>\n\n\n\n<p>Klughammer, J., Abravanel, D.L., Segerstolpe, \u00c5., Blosser, T.R., Goltsev, Y., Cui, Y., Goodwin, D.R., Sinha, A., Ashenberg, O., Slyper, M. and Vigneau, S., 2024. <strong>A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features.<\/strong>&nbsp;Nature Medicine,&nbsp;30(11), pp.3236-3249.<\/p>\n\n\n\n<p>AbuMadighem, A., Cohen, O., and Huleihel, M.. 2024. <strong>Elucidating the Transcriptional States of Spermatogenesis\u2014Joint Analysis of Germline and Supporting Cell, Mice and Human, Normal and Perturbed, Bulk and Single-Cell RNA-Seq<\/strong>. Biomolecules 14, no. 7: 840.<\/p>\n\n\n\n<p>Kaufman, B., Taha, T., Abramov, O., Zohar, Y., Mhameed, K., Cohen, O., Porgador, A., Elkabets, M. and Billan, S. 2024. <strong>PD1 ligand functionality a biomarker of response to anti PD1 treatment in patients with HNSCC<\/strong>. NPJ Precision Oncology, 8(1), p.126.<\/p>\n\n\n\n<p>Fu, X., Pereira, R., Liu, C.C., De Angelis, C., Shea, M.J., Nanda, S., Qin, L., Mitchell, T., Cataldo, M.L., Veeraraghavan, J. and Sethunath, V., 2023. <strong>High FOXA1 levels induce ER transcriptional reprogramming, a pro-metastatic secretome, and metastasis in endocrine-resistant breast cancer<\/strong>. Cell Reports, 42(8).<\/p>\n\n\n\n<p>Kaufman, B., Abramov, O., Ievko, A., Apple, D., Shlapobersky, M., Allon, I., Greenshpan, Y., Bhattachrya, B., Cohen, O., Charkovsky, T. and Gayster, A., 2023. <strong>Functional binding of PD1 ligands predicts response to anti-PD1 treatment in patients with cancer<\/strong>. Science advances, 9(21), p.eadg2809.<\/p>\n\n\n\n<p>Jagadeeshan, S., Prasad, M., Badarni, M., Ben-Lulu, T., Liju, V.B., Mathukkada, S., Saunders, C., Shnerb, A.B., Zorea, J., Yegodayev, K.M., Wainer, M., Vtorov, L., Allon, I., Cohen, O., Gausdal, G., Friedmann-Morvinski, D., Cheong, S.C., Ho, A.L., Rosenberg, A.J., Kessler, L., Burrows, F., Kong, D., Grandis, J.R., Gutkind, J.S. and Elkabets, M., 2023. <strong>Mutated HRAS activates YAP1\u2013AXL signaling to drive metastasis of head and neck cancer<\/strong>. Cancer research, 83(7), pp.1031-1047.<\/p>\n\n\n\n<p><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Selected Publications Wander, S.A., Cohen, O., Gong, X., Johnson, G.N., Buendia-Buendia, J.E., Lloyd, M.R., Kim, D., Luo, F., Mao, P., Helvie, K. and Kowalski, K.J., 2020. The genomic landscape of intrinsic and acquired resistance to cyclin-dependent kinase 4\/6 inhibitors in patients with hormone receptor\u2013positive metastatic breast cancer. Cancer discovery, 10(8), pp.1174-1193. Nayar, U., Cohen, O., [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-286","page","type-page","status-publish","hentry"],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v27.4 - https:\/\/yoast.com\/product\/yoast-seo-wordpress\/ -->\r\n<title>Research - Ofir Cohen Lab<\/title>\r\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\r\n<link rel=\"canonical\" href=\"https:\/\/fohs.bgu.ac.il\/ocohenlab\/research-news\/\" \/>\r\n<meta property=\"og:locale\" content=\"en_US\" \/>\r\n<meta property=\"og:type\" content=\"article\" \/>\r\n<meta property=\"og:title\" content=\"Research - Ofir Cohen Lab\" \/>\r\n<meta property=\"og:description\" content=\"Selected Publications Wander, S.A., Cohen, O., Gong, X., Johnson, G.N., Buendia-Buendia, J.E., Lloyd, M.R., Kim, D., Luo, F., Mao, P., Helvie, K. and Kowalski, K.J., 2020. The genomic landscape of intrinsic and acquired resistance to cyclin-dependent kinase 4\/6 inhibitors in patients with hormone receptor\u2013positive metastatic breast cancer. Cancer discovery, 10(8), pp.1174-1193. 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